People

RSMAS/MBF
University of Miami
4600 Rickenbacker Causeway
Miami, FL 33149
Tel: 305.421.4814
jmcmanus@rsmas.miami.edu
Books and monographs published (all formally refereed):
Vergara, S., McManus J.W., Kesner-Reyes K.N., Me–ez L.A.B., Funk R.Z., Evangelista R.C., Noordeloos M., Serrano A.M.B., Rull M.F.S.J., Alarcon V.L., Meneses A.B.T. and Glorioso J.R.. 2000. ReefBase 2000: Improving policies for sustainable management of coral reefs. Ver.2000. ICLARM, Philippines, Manila, Philippines.
Bryant, D., Burke, L., McManus, J., and Spalding, M. 1998. Reefs at Risk: a Map-Based Indicator of Threats to the World's Coral Reefs. World Resources Institute. N.Y. 56 p.
McManus, J.W., M.C. Ablan, S.G. Vergara, L.A.B. Me–ez, B.M. Vallejo, K.P. Kesner, M.G. Gorospe, and L. Halmarick. 1997. The ReefBase Aquanaut Survey Manual. ICLARM. 61 p.
Jameson, S.C., McManus J.W., and Spalding M.D. 1995. State of the Reefs: Regional and Global Perspectives. International Coral Reef Initiative (ICRI) Secretariat Background Paper, U.S. State Department. 32 p.
McManus, J.W., Na–ola, C., Reyes, R., and Kesner, K. 1992. Resource Ecology of the Bolinao Coral Reef System. ICLARM Studies and Reviews 22, 117 p.
McManus, J.W. 1985. Descriptive community dynamics: background and an application to tropical fisheries management. Ph.D. dissertation, Graduate School of Oceanography, University of Rhode Island. Published by University Microfilms. 217 p.
Formally Refereed Journal Articles:
McManus JW, Shao K-T, Lin SY (2010) Toward establishing a Spratly Islands International Marine Peace Park: ecological importance and supportive collaborative activities with an emphasis on the role of Taiwan. Ocean Development and International Law 41:270-280.
Y–iguez AT, McManus JW, Collado-Vides L (2010) Capturing the dynamics in benthic structures: environmental effects on morphology in the macroalgal genera Halimeda and Dictyota. Marine Ecology Progress Series 411:17-32.
Brandt M, McManus JW (2009) Dynamics and impact of the coral disease white plague: insights from a simulation model. Disease of Aquatic Organisms 87: 117–133. doi: 10.3354/dao02137.
Brandt, M. and McManus, J.W. (2009). Disease incidence is related to bleaching severity in reef-building corals. Ecology 90(10): 2859-2867.
Y–iguez, A, McManus, J.W. and DeAngelis, D.L. (2008) Allowing macroalgae growth forms to emerge: use of an agent-based model to understand the growth and spread of macroalgae in Florida coral reefs, with emphasis on Halimeda tuna. Ecological Modelling 216: 60–74. doi:10.1016/j.ecolmodel.2008.04.016.
McManus, J.W. and Polsenberg, J.F., 2004. Coral-Algal Phase-Shifts on Coral Reefs: Ecological and Environmental Aspects. Progress in Oceanography 60:263-279.
Chen CA, Ablan MCA, McManus JW, Bell J.D., Tuan V.S., Cabanban A.S. and Tsao K.S, 2004. Variable numbers of tandem repeats (VNTRs), heteroplasmy, and sequence variation of the mitochondrial control region in the threespot dascyllus, Dascyllus trimaculatus (Perciformes : Pomacentridae) Zoological Studies 43 (4): 803-812.
Chen CA, Ablan MCA, McManus JW, Bell J.D., Tuan V.S., Cabanban A.S. and Tsao K.S, 2004. Population structure and genetic variability of six bar wrasse (Thallasoma hardwicki) in northern South China sea revealed by mitochondrial control region sequences Marine Biotechnology 6 (4): 312-326.
McManus, J. W., Me–ez, L. A. B., Reyes, K. N. K., Vergara, S. G., and Ablan, M. C. 2000. Coral reef fishing and coral-algal phase shifts: implications for global reef status. ICES Journal of Marine Science, 57(3): 572-578.
Pollnac, R.B., McManus, J.W., del Rosario, A. E., Banzon, A.S., Vergara, S.G. and Gorospe, M.L.G. 2000. Unexpected relationships between coral reef health and socio-economic pressures in the Philippines: ReefBase/RAMP applied. Marine & Freshwater Research 51:529-533.
Kleypas, J., McManus, J.W. and Me–ez, L.A.B. 1999. Environmental limits to coral reef development: Where do we draw the line? American Zoologist.39, 146 - 159.
McManus, J.W. 1997. Tropical marine fisheries and the future of coral reefs: a brief review with emphasis on Southeast Asia. Coral Reefs 16 Suppl. S121-S127. Also Proc. 8th Int. Coral Reef Symp. 1: 229-134.
McManus, J.W., Na–ola, C.L., and Reyes, R.B. 1997. Effects of some destructive fishing methods on coral cover and potential rates of recovery. Environmental Management. 21(1): 69-78.
Maragos, J.E., Crosby, M.P. and McManus, J.W. 1996. Coral reefs and biodiversity: a critical and threatened relationship. Oceanography 9(1):83-99.
McManus, J.W. 1994. The Spratly Islands: A Marine Park? Ambio 23(3):181-186
Campos, W.L., A.G.C. del Norte and J.W. McManus, 1994. Yield estimates, catch, effort and fishery potential of the reef flat in Cape Bolinao, Philippines. J. Applied Ichthyol. 10:82-95.
Saila, S.B., Kocic V. Lj. and McManus, J.W. 1993. Modelling the effects of destructive fishing practices on tropical coral reefs. Mar. Ecol. Prog. Ser. 94:51-60.
McManus, J.W. and Pauly, D. 1990. On measuring ecological stress: variations on a theme by R.M. Warwick. Marine Biology 106:305–308.
McManus, J.W. 1988. Coral reefs of the ASEAN Region: status and management. Ambio 17(3):189–193.
McManus, J.W. and Wenno, J.J. 1981. Coral Communities in Outer Ambon Bay, Indonesia: a general assessment survey. Bulletin of Marine Science 31(3):574–580.
Formally Refereed Proceedings and Chapters:
McManus, John. 2001. Coral Reefs. p. 524-534 In: J.H. Steele, S.A. Thorpe and K.K. Turekian (eds.) Encyclopedia of Ocean Sciences. Academic Press, London. 2000 pp.
McManus, J.W. 1998. Marine reserves and biodiversity: Toward 20% by 2020. p. 25-29. In McManus, J. W., van Zwol, C., Garces, L.R. and Sadacharan, D. (eds). A Framework for Future Training in Marine and Coastal Protected Area Management. ICLARM Conf. Proc. 57, 54 p.
McManus, J.W. and Noordelos, M. 1998. Toward a global inventory of coral reefs (GICOR): Remote sensing, international cooperation and ReefBase. Proc. 5th Internat. Conf. Remote Sensing of the Marine Environment, San Diego, Ca. pp. I-83 - I-89.
McManus, J.W. 1998. ReefBase: Status and plans. p. 131-138. In: Hatziolos, M.E., Hooten, A. J. and Fodor, M. (eds). Coral Reefs: Challenges and Opportunities for Sustainable Management. Proceedings. The World Bank.
Coronado, G.U. and McManus, J.W. 1997. Mapper: a mapping tool for database systems with coral reef applications. Proc. 8th Intl. Coral Reef Symp. 2:1561-1564.
Eakin, C.M., McManus, J.W., Spalding, M.D., Jameson, S.C. 1997. Coral reef status around the world: where are we and where do we go from here? Proc. 8th Int. Coral Reef Symp. 1: 277-282.
McManus, J.W. and Ablan, M.C. 1997. ReefBase: a global database of coral reefs and their resources. Proc. 8th Intl. Coral Reef Symp. 2:1541-1544.
McManus, J.W. and Me–ez, L.A.B.. 1997. Potential effects of a Spratly Island Marine Park. Proc. 8th Intl. Coral Reef Symp. 2:1943-1948.
McManus, J.W. 1997. Ecological Community Structure Analysis: Applications in Fisheries Management. pp. 133-142. In: Silvestre, G. and Pauly, D. (eds.). Status and Management of Coastal Fisheries in Tropical Asia. ICLARM Workshop Proc. ICLARM, Manila, Philippines.
McManus, J.W. 1996. Marine bottomfish communities from the Indian Ocean coast of Bali to mid-Sumatra. p. 91-101. In: D. Pauly and P. Martosubroto (eds.) Baseline studies of Biodiversity: the Marine Fisheries of Western Indonesia. ICLARM Stud. and Rev. 23, 231 p.
McManus, J.W. 1996. Social and economic aspects of reef fisheries and their management. Chapter 10. p. 249-181. In: N. Polunin and C. Roberts (eds.) Coral Reef Fisheries. Chapman and Hall. 477 p.
McManus, J.W., Na–ola, C.L., del Norte, A.G.C., Reyes, R.B. Pasamonte, J.P.N., Armada, N.P., Gomez, E.D. and Ali–o, P.M. 1996. Coral reef fishery sampling methods. Chapter 5. p. 226-270. In: V.F. Gallucci, S.B. Saila, D.J. Gustafson and B.J. Rothschild (eds) Stock Assessment: Quantitative Methods and Applications for Small-scale Fisheries. CRC Lewis Publishers, New York. 527 p.
Saila, S.B., McKenna, J.E., Formaion, S., Silvestre, G. and McManus, J. 1996. Empirical methods and models for multispecies stock assessment. Chapter 8. p. 403-472. In: V.F. Gallucci, S.B. Saila, D.J. Gustafson and B.J. Rothschild (eds) Stock Assessment: Quantitative Methods and Applications for Small-scale Fisheries. CRC Lewis Publishers, New York. 527 p.
McManus, J.W. 1996. Assessing the coral reefs of the world: a multifaceted strategy. In: Proceedings of the NOAA/NOS Coral Reef Remote Sensing Monitoring Workshop. Key Biscayne, Florida.
McManus, J.W., Vallejo, B., Me–ez and Coronado, G. 1995. ReefBase: an international database on coral reefs. In: Marine/Coastal Biodiversity in the Tropical Region (workshop proceedings). East-West Center, Honolulu.
McManus, J.W. 1995. Future prospects for artificial reefs in the Philippines. In: J.L. Munro and M.C. Balgos (eds.) Artificial Reefs in the Philippines. ICLARM Conf. Proc. 49.
McManus, J.W. 1995. Coastal marine fisheries, mollusk culture and seaweed culture in Southeast Asia: Integrated planning and precautions. In: ADSEA '94: Aquaculture Development in Southeast Asia. (workshop proceedings). Southeast Asian Fisheries Development Council (SEAFDEC), Iloilo, Philippines.
McManus, J.W. 1995. Large and Small Scale Protected Areas: Planning, Investment and Intergenerational Quality of Life. p. 60-71. In: A.J. Hooten and M.E. Hatziolos (eds.) Sustainable Financing Mechanisms for Coral Reef Conservation: Proceedings of a Workshop. Environmentally Sustainable Development Proceedings Series No. 9. World Bank. 116 p.
McManus, J.W., Na–ola, C., Reyes, R., and Kesner, K. 1995. The Bolinao Coral Reef Resource System. p. 193-204 In: M.A.Juinio-Me–ez and G.F. Newkirk (eds) Philippine Coastal Resources Under Stress. Coastal Resources Research Network and Marine Science Institute, University of the Philippines, Diliman, Quezon City, Philippines. 240 p.
Ali–o, P., McManus, L., Fortes, M., McManus, J., Trono G., Na–ola, C., and Jacinto G. 1994. Initial parameter estimation of a reef flat ecosystem in Bolinao, Pangasinan, Northwestern Philippines. p. 252-258. In: V. Christensen and D. Pauly (eds.) Trophic Models of Aquatic Ecosystems. ICLARM Conference Proceedings No. 26. 390 p.
McManus, J.W. 1994. Suggestions for future Philippine-Australian coral reef research. p. 68-71. In: J.L. Munro and P.E. Munro (eds.) The Management of Coral Reef Resource Systems. ICLARM Conf. Proc. 44, 129 p.
McManus, J.W. 1993. Managing seagrass fisheries in Southeast Asia: an introductory review. In: M.D. Fortes and N. Wirjoatmodjo (eds.) Seagrass Resources in Southeast Asia. UNESCO-ROSTEA. (workshop proceedings). Jakarta, Indonesia. 361 p.
Saila, S.B., Kocic V. Lj. and McManus, J.W. 1993. Modelling the effects of destructive fishing practices on tropical coral reefs. Mar. Ecol. Prog. Ser. 94:51-60.
Jaranilla, H.S. and McManus, J.W. 1992. Applications of jackknife estimations of species richness and diversity to a coral reef fish community in Bolinao, Philippines. Proc. First National Symposium in Marine Science (Phillippines). p. 225–223.
McManus, J.W. and Cabanban, A.S. 1992. Coral reef recruitment studies in Southeast Asia: background and implications. p.7-18. In: Workshop on Coral and Fish Recruitment (proceedings). ASEAN-Australia Project: Living Coastal Resources. Townsville, Australia. 90 p.
del Norte, A.G.C., McManus, J.W., Na–ola, C.L., Cabansag, J. and Campos, W.L. 1989. Overfishing on a Philippine Coral Reef: a glimpse of the future. In Coastal Zone '89: Proceedings of the 6th Symposium on Coastal and Ocean Management, 1989. 5:3087–3097.
McManus, J.W. 1989. Earth Observing system and coral reef fisheries. In Coastal Zone '89: Proceedings of the 6th Symposium on Coastal and Ocean Management, 1989. 5:4936–4949.
McManus, J.W. 1989. Zonation among demersal fishes of Southeast Asia: The southwest shelf of Indonesia. In Coastal Zone '89: Proceedings of the 6th Symposium on Coastal and Ocean Management, 1989. 2:1011–1022.
Na–ola, C.L. Jr., McManus, J.W., Campos, W.L., del Norte, A.G.C., Reyes, R.B. Jr., Cabansag, J.B.P. and Pasamonte, J.N. 1989. Spatio–Temporal variations in community structure on a heavily fished forereef slope in Bolinao, Philippines. pp. 377–380. In: Hirano, R. and I. Hanyu, eds. The Second Asian Fisheries Forum. 991 p. Asian Fisheries Society, Manila, Philippines.
McManus, J.W., Ferrer, E.M. and Campos, W.L. 1988. A village–level approach to coastal adaptive management and resource assessment (CAMRA). Proceedings of the 6th International Coral Reef Symposium. 2:381–386.
McManus, J.W. 1986. Depth zonation in a demersal fishery in the Samar Sea, Philippines, p. 483–486. In J.L. Maclean, L.B. Dizon and L.V. Hosillos (eds.) The First Asian Fisheries Forum. Asian Fisheries Society, Manila, Philippines.
McManus, J.W. 1985. Marine speciation, tectonics and sea–level changes in Southeast Asia. Proceedings of the 5th International Coral Reef Congress. 4:133–138.
McManus, J.W., Miclat, R.I., and Palaganas, V.P. 1981. Coral and fish community structure of Sombrero Island, Batangas, Philippines. Proceedings of the 4th International Coral Reef Symposium. 2:263–269.
Sy, J.C., Herrera, F.S., and McManus, J.W. 1981. Coral Community structure of a fringing reef at Mactan Island, Cebu, Philippines. Proceedings of the 4th International Coral Reef Symposium. 2:263–269.
Glenn, C., McManus, J.W., Talaue, L.L., Ali–o, P.M, and Banzon, V.F. 1981. Distributions of living foraminifers on a portion of Apo Reef, Mindoro, Philippines. Proceedings of the 4th International Coral Reef Symposium. 2:775–780.
Other Reports:
Ablan, M.C.A., J.W. McManus and K. Viswanathan, 2004. Indicators for management of coral reefs and their applications to marine protected areas. NAGA: The WorldFish Center Quarterly Vol.27, No. 1&2 : 31-39.
Ablan, M.C.A., McManus, J.W., Chen, C.A., Shao, K.T., Bell, J., Cabanban, A.S., Tuan, V.S., Jarayabhand, P., Suharsono, Alcala, A. and Arthana, I.W. 2003. Enhancing the resilience of coral reef resources: Could genetic marking contribute to increasing the resilience of coral reef resources? IHDP Update 2/2003. International Human Dimensions Programme on Global Environmental Change.
McManus, J.W. Contributing Author to: Burke, L. et al. 2002. Reefs at Risk Southeast Asia. World Resources Institute. 72 p.
McManus, J.W. 2002. The global importance of Philippine coral reefs. pp. 7-8. In: Ali–o P.M, Miclat, E.F.B., Na–ola, C.L., Jr., Roa-Quiaouit, H.A., and Campos, R.T. (eds), Atlas of Philippine coral reefs. Goodwill Trading Co., Inc. Manila, Philippines.
McManus, J. (Compiler), 2002. Report from the Information Needs Working Group in Bruckner, A.W.(ed.). Pp. 54-58. NOAA Technical Memorandum NMFS-OPR-24, Silver Spring, MD. 199 pp.
Ablan, M.C.A., J.W. McManus, C.A. Chen, K.T. Shao, J. Bell, A.S. Cabanban, V.S. Tuan and I.W. Arthana, 2002 Meso-scale Transboundary Units for the Management of Coral Reefs in the South China Sea Area. NAGA- The WorldFish Center Quarterly. Vol.25, No. 3&4 (July - December 2002). Pp4-9
Dickman, C. and J. McManus, 2002. Priorities for Caribbean coral reef research: an overview of the results from an international workshop of the National Center for Caribbean Coral Reef Research (NCORE). in Report of the Regional Workshop for Tropical Americas, Cancun, Mexican. June 12, 2002 - June 14, 2002. International Coral Reef Initiative (ICRI). Pp. 120-128.
McManus, J.W. 2001. The death of a coral reef: Bolinao. pp. 95-97. In: Talbot, F. and Wilkinson, C. Coral reefs, mangroves and seagrasses: a handbook for managers.
McManus, J.W. and S. Vergara, 1999. ReefBase 3.0 and the ReefBase Aquanaut system. in: Maragos, J.E. and Grober-Dunsmore, R. (eds), Proceedings of the Hawaii Coral Reef Monitoring Workshop, June 9-11, 1998, Honolulu, Hawaii, pp.159-172.
McManus, J.W. and Ablan, M.C.A. 1995. ReefBase: toward informed coral reef management. EU Bulletin 8(3):22.
Wells, S. and McManus, J.W. 1994. ReefBase - a global database of coral reef systems and their resources. Naga 17(1):16. (reprinted in at least 10 newsletters and 1 journal (Marine Pollution Bulletin)).
McManus, J.W. 1993. Coral Reefs: What happened to management science? Reef Encounter. 13 July. pp. 7-8.
McManus, J.W. 1993. Problems with percent composition analyses. Reef Encounter. 13 July. pp. 9-10.
McManus, J.W., Na–ola, C., Reyes, R., and Kesner, K. 1993. Ecological Effects of Harvesting on a Philippine Fringing Reef. Final Technical Report I. Project REEF. Marine Science Institute, University of the Philippines and Philippine Department of Agriculture. 50 pp.
McManus, J.W., Na–ola, C., Reyes, R., and Kesner, K. 1993. The Proposed Bolinao Marine Reserve/Park System: Ecological and Reef Use Factors. Final Technical Report II. Project REEF. Marine Science Institute, University of the Philippines and Philippine Department of Agriculture. 15 pp.
McManus, J.W. 1993. TACO: Table Analysis by Classification of Ordinations. Final Technical Report IV. Project REEF. Marine Science Institute, University of the Philippines and Philippine Department of Agriculture. 61 pp.
McManus, J.W. 1992. The Spratly Islands: a marine park alternative. Naga - The ICLARM Quarterly 15(3):4-8.
McManus, J.W., Na–ola, C., Reyes, R., and Kesner, K. 1992. Resource Ecology of the Bolinao Coral Reef System: A Summary of an upcoming book. Naga - The ICLARM Quarterly 15(3):43-45.
McManus, J.W. 1990. A search for new methods for fish stock assessment and management, the FSA–CRSP. Overview and Philippine activities. Fishbyte. 8(1):45–46.
McManus, J.W. 1990. Ecological Computer Programs: the importance of being friendly. Naga - The ICLARM Quarterly 13(2):5–8.
McManus, J.W. 1990. Recommendations for the future development of the Magellanes School of Fisheries. ICMRD Report. 10 p.
McManus, J.W. 1989. The proposed Philippine Fisheries Sector Program: a preliminary evaluation. ORAD – U.S. AID/Philippines Report. 10 p.
McManus, J.W. 1984. Fishpak HP–85/87: A set of programs for the storage and preliminary analysis of fisheries survey data. Technical Reports of the Department of Marine Fisheries No. 4. College of Fisheries, University of the Philippines in the Visayas, and the German Agency for Technical Cooperation (GTZ). 110 pp.
del Norte, A.G.C., Na–ola, C.L., Campos, W.L., McManus, J.W., Reyes, R.B. and Cabansag, J.B.P. 1989. Results of the Bolinao Reef Fishery Survey (September 1986–June 1988). Data Report of the Multispecies Field Studies Component, Fish Stock Assessment Collaborative Research Support Program (FSA–CRSP). Parts I & II. Marine Science Institute, University of the Philippines, Diliman, Q.C., Philippines. approx. 1000 pp. plus diskettes.
Na–ola, C.L., del Norte, A.G.C., Campos, W.L. McManus, J.W., Reyes, R.B. and Cabansag, J.B.P. 1989. Results of the Bolinao Reef Slope Visual Census (July 1987 – June 1988). Data Report of the Multispecies Field Studies Component, Fish Stock Assessment Collaborative Research Support Program (FSA–CRSP). Marine Science Institute, University of the Philippines, Diliman, Q.C., Philippines. approx. 500 pp. plus diskettes.
del Norte, A.G.C., C.L. Na–ola, C.L., McManus, J.W., Reyes, R.B. and Pasamonte, J.N. 1990. Results of the Bolinao Reef Fishery Survey (July 1988 – June 1989). Data Report of the Multispecies Field Studies Component, Fish Stock Assessment Collaborative Research Support Program (FSA–CRSP). Parts I, II & III. Marine Science Institute, University of the Philippines, Diliman, Q.C., Philippines. Approx. 1,500 pp. plus diskettes.
Na–ola, C.L., del Norte, A.G.C., McManus, J.W., Reyes, R.B. and Pasamonte, J.N. 1990. Results of the Bolinao Reef Slope Visual Census (July 1988 – June 1989). Data Report of the Multispecies Field Studies Component, Fish Stock Assessment Collaborative Research Support Program (FSA–CRSP) Parts I & II. Marine Science Institute, University of the Philippines, Diliman, Q.C., Philippines. Approx. 1,000 pp. plus diskettes.
McManus, J.W. and Roa, P.A. 1988. Finding gradients and groups of stations and species. Fishbyte 6(1):19
McManus, J.W. 1987. Getting the most out of tropical fisheries. Maritimes 31(3):14–15.
McManus, J.W. 1980. Philippine coral exports: the coral drain. ICLARM Newsletter (now Naga) 3(1):18–21.
'78–83 Ten technical reports for Philippine Government, U.S. AID/Indonesia, United Nations, Cities Service Oil Co., International Center for Living Aquatic Resources Management, Marcopper Mining Corporation and others.
- Marilyn Brandt — agent-based modeling and ecology of coral diseases
- Aletta Yñiguez — 3D morphometric agent-based modeling of macroalgal
- Wade Cooper — ecology and modeling of coral early life stages





